RetrogeneDB ID: | retro_pabe_182 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:96618941..96619244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000012637 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSPPYG00000006601 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 67.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MAS.S.LACI.S.LILH.DEVTV.EDKIN.LIKA.GVNVE.FWP.LFAKALANV.IGSLICNVGAGGPA. | |
Retrocopy | MASISQLACISSDLILHNDEVTVKEDKINTLIKAGGVNVERFWPSLFAKALANVDIGSLICNVGAGGPAL |
Parental | AAGAAPA |
.AGAAPA | |
Retrocopy | VAGAAPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 56 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .56 RPM |
SRP007412_heart | 0 .00 RPM | 134 .65 RPM |
SRP007412_kidney | 0 .00 RPM | 166 .40 RPM |
SRP007412_liver | 0 .00 RPM | 207 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2079 |
Gorilla gorilla | retro_ggor_1628 |