RetrogeneDB ID: | retro_itri_796 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393324.1:6164847..6165096(-) | ||
Located in intron of: | ENSSTOG00000006811 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 63.95 % |
Parental protein coverage: | 73.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ACIYSALILHDDEVTVTEDKINALIK-AAGVNVEPFWPGLFAKALANVN-IGSLICNVGAGGPAPAAGAA |
A.I.SALIL..D.VTVTEDKIN.L...A.GVNVE.FWPGL.AKALANV....S.IC...AGG.A.AAGA. | |
Retrocopy | AGICSALILNEDKVTVTEDKINTLLR<AGGVNVESFWPGLSAKALANVH>LRSCICILRAGGGAAAAGAV |
Parental | PAGGPAPSTAAAPAEE |
.AGGP.P.....P.EE | |
Retrocopy | SAGGPSP-PSLCPREE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |