RetrogeneDB ID: | retro_itri_976 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393354.1:3814873..3815165(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 90.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASVSELACIYSALILHDDEVTVTEDKI-NALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPA |
MASVSEL.CIYS.LILH...VTVTE.K..N.LIKAAGVNVE.FW..LF.KA.ANVNI.....N.GAGGP. | |
Retrocopy | MASVSELTCIYSVLILHNNKVTVTEEKT<NVLIKAAGVNVEHFWLSLFVKAQANVNIS----NLGAGGPS |
Parental | PAAGAAPAGGPAPST-AAAPAEEKKVEAKKEESEE |
PAA.AAPAG.P.P.T..AAPA.EKKV.AKKEES.E | |
Retrocopy | PAADAAPAGRPTPFT<QAAPA-EKKVAAKKEESAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |