RetrogeneDB ID: | retro_mmus_247 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:127286040..127286385(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000090460 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp1 | ||
Ensembl ID: | ENSMUSG00000007892 | ||
Aliases: | Rplp1, 2410042H16Rik, Arpp1, C430017H15Rik | ||
Description: | ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099] |
Percent Identity: | 95.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MASVSELACIYS.LILHDDEVTVTEDKI.ALIKAAGVSVEPFWPG.FAKALANVNIGSLICNVGAGGPAP | |
Retrocopy | MASVSELACIYSTLILHDDEVTVTEDKISALIKAAGVSVEPFWPGSFAKALANVNIGSLICNVGAGGPAP |
Parental | AAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFGLFD |
AAGAAPAGG.APSTAAAPAEEKKVEAKKEESEESEDD.GFGLFD | |
Retrocopy | AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESEDDRGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 145 .11 RPM |
SRP007412_cerebellum | 0 .04 RPM | 79 .07 RPM |
SRP007412_heart | 0 .00 RPM | 153 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 121 .10 RPM |
SRP007412_liver | 0 .03 RPM | 120 .18 RPM |
SRP007412_testis | 0 .14 RPM | 71 .95 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_129126 | 68 libraries | 63 libraries | 627 libraries | 208 libraries | 106 libraries |