RetrogeneDB ID: | retro_btau_186 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:52249621..52249966(-) | ||
Located in intron of: | ENSBTAG00000010737 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000039728 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSBTAG00000018320 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:Q56K14] |
Percent Identity: | 98.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MASVSELACIYSALILHDDEVTV.EDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP.P | |
Retrocopy | MASVSELACIYSALILHDDEVTVMEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPTP |
Parental | AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD |
AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD | |
Retrocopy | AAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 5 .98 RPM | 269 .21 RPM |
ERP005899_muscle | 10 .14 RPM | 1805 .18 RPM |
SRP017611_brain | 1 .42 RPM | 155 .77 RPM |
SRP017611_kidney | 2 .67 RPM | 405 .12 RPM |
SRP017611_liver | 1 .74 RPM | 302 .94 RPM |
SRP030211_testis | 2 .83 RPM | 381 .88 RPM |