RetrogeneDB ID: | retro_rnor_493 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:156498512..156498854(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSRNOG00000011955 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 90.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
.ASVSELACIY.ALIL.D.EV.V.EDKI.ALIKAAGV.VEPFWPGLFAKALANVNIGSLICNVGAGGPAP | |
Retrocopy | IASVSELACIYTALIL*DNEVKVREDKIIALIKAAGVIVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
Parental | AAGAAPAGGPAPSAAAAPAEEKKVEAKKEESEESEDDMGFGLFD |
AAGAAPAG.PAPSA.AAPAEEKKVEAKKEESEE.EDDMGFGLFD | |
Retrocopy | AAGAAPAGVPAPSADAAPAEEKKVEAKKEESEEYEDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .47 RPM |