RetrogeneDB ID: | retro_btau_1717 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 9:96210022..96210362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSBTAG00000018320 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:Q56K14] |
Percent Identity: | 71.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
.ASV.E.ACIYSALILH..EV.VTE.KINAL.KAAGVN..P.WPGLFA..LA.VNIG.L....GA.GPAP | |
Retrocopy | VASVLEFACIYSALILHNKEVMVTEGKINALVKAAGVNTGPSWPGLFANTLASVNIGDLTRKAGASGPAP |
Parental | AAGAAPAGGPAPSTAAAPAEEKKVEA-KKEESEESDDDMGFGLFD |
AA.A.P.GGPAPST.AAP.E.KK.EA..KE.SEESD.DMG.GL.D | |
Retrocopy | AASAEPDGGPAPSTPAAPGENKKAEA>RKE-SEESDHDMGSGLSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 269 .21 RPM |
ERP005899_muscle | 0 .05 RPM | 1805 .18 RPM |
SRP017611_brain | 0 .00 RPM | 155 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 405 .12 RPM |
SRP017611_liver | 0 .00 RPM | 302 .94 RPM |
SRP030211_testis | 0 .05 RPM | 381 .88 RPM |