RetrogeneDB ID: | retro_cjac_469 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:138268038..138268306(+) | ||
Located in intron of: | ENSCJAG00000010299 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSCJAG00000032919 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 61.05 % |
Parental protein coverage: | 82.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKAL-ANVNIGSLICNVGAGGPAPAAG |
..L.CIY.ALIL........EDKINALIKAAGVN.E.FWPGL.AKAL.AN.NIGSLIC.VGA.G.APA.G | |
Retrocopy | AHLHCIYLALILYHGK----EDKINALIKAAGVNFESFWPGLCAKAL>ANTNIGSLICTVGADGRAPAGG |
Parental | AAPAGGPAPSTAAAPAEEKKVEAKK |
.A.....AP.T.....E.KK.E.K. | |
Retrocopy | PARSTAAAP-TKENKVEAKKEESKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .47 RPM | 107 .48 RPM |
SRP051959_heart | 0 .25 RPM | 102 .58 RPM |
SRP051959_kidney | 0 .29 RPM | 120 .09 RPM |
SRP051959_liver | 0 .09 RPM | 96 .48 RPM |
SRP051959_lung | 0 .28 RPM | 121 .91 RPM |
SRP051959_lymph_node | 0 .39 RPM | 168 .97 RPM |
SRP051959_skeletal_muscle | 0 .07 RPM | 176 .65 RPM |
SRP051959_spleen | 0 .25 RPM | 171 .41 RPM |