RetrogeneDB ID: | retro_itri_1589 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393560.1:1703111..1703443(-) | ||
Located in intron of: | ENSSTOG00000001688 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSSTOG00000027893 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 63.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIG-SLICNVGAGGPA |
MA..SE..CIYSAL.L.DDEV.VTE..IN.LIKAAGVN.EPF.P..FAKAL.N.N.G.SLI.NVGAGG.A | |
Retrocopy | MAYISEFTCIYSALVLQDDEVIVTE-RINTLIKAAGVNGEPF*PDAFAKALVNTNTG<SLIGNVGAGGLA |
Parental | PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD |
.AA..A.AGGP..ST....A..K........SE.SDD.MGFGLFD | |
Retrocopy | LAADKALAGGPDLSTTVTLA--KXXXXXXXXSEDSDDAMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |