RetrogeneDB ID: | retro_rnor_1827 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:136338249..136338441(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSRNOG00000011955 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 95.31 % |
Parental protein coverage: | 56.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVG |
MASVSELACIYSALIL.D.EV.VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVG | |
Retrocopy | MASVSELACIYSALILRDNEV*VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .07 RPM | 0 .91 RPM |
SRP017611_liver | 0 .00 RPM | 0 .47 RPM |