RetrogeneDB ID:

retro_ggor_1628

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2a:16200346..16200577(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPLP1
Ensembl ID:ENSGGOG00000003980
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1628
ATGGCCTCCATCTCCCAGCTTGCCTGCATCTCCTCGGACCTCATTCTGCACAACGATGAAGTGACCGTCACGGAGGATAA
GATCGATGCCCTCATTAAAGCAGGCGGTGTAAATGTTGAACTTTTTTGGCCTAGCTTGTTTGCAAAGGCCCTGGCCAGCG
TCAACGTTGGGAGCCTCATCTGCAACGTAGGAGCTGGTGGACCTGCTCCAGTAGCTGGTGCTGCTCCAGCT

ORF - retro_ggor_1628 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.42 %
Parental protein coverage: 67.54 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP
MAS.S.LACI.S.LILH.DEVTVTEDKI.ALIKA.GVNVE.FWP.LFAKALA.VN.GSLICNVGAGGPAP
RetrocopyMASISQLACISSDLILHNDEVTVTEDKIDALIKAGGVNVELFWPSLFAKALASVNVGSLICNVGAGGPAP
ParentalAAGAAPA
.AGAAPA
RetrocopyVAGAAPA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 66 .27 RPM
SRP007412_cerebellum 0 .00 RPM 80 .18 RPM
SRP007412_heart 0 .00 RPM 158 .29 RPM
SRP007412_kidney 0 .00 RPM 154 .31 RPM
SRP007412_liver 0 .00 RPM 293 .98 RPM
SRP007412_testis 0 .00 RPM 83 .92 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1628 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1628 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2079
Pongo abelii retro_pabe_182

Parental genes homology:
Parental genes homology involve 20 parental genes, and 191 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000183204 retrocopies
Callithrix jacchus ENSCJAG0000003291919 retrocopies
Equus caballus ENSECAG000000085424 retrocopies
Homo sapiens ENSG0000013781818 retrocopies
Gorilla gorilla ENSGGOG00000003980 13 retrocopies
Latimeria chalumnae ENSLACG000000126301 retrocopy
Macropus eugenii ENSMEUG000000152776 retrocopies
Myotis lucifugus ENSMLUG0000001054233 retrocopies
Monodelphis domestica ENSMODG000000092091 retrocopy
Mustela putorius furoENSMPUG0000000020413 retrocopies
Mus musculus ENSMUSG000000078926 retrocopies
Oryctolagus cuniculus ENSOCUG000000150878 retrocopies
Otolemur garnettii ENSOGAG0000002964119 retrocopies
Ochotona princeps ENSOPRG0000000116311 retrocopies
Procavia capensis ENSPCAG000000145957 retrocopies
Pongo abelii ENSPPYG000000066015 retrocopies
Rattus norvegicus ENSRNOG000000119556 retrocopies
Rattus norvegicus ENSRNOG000000138743 retrocopies
Sarcophilus harrisii ENSSHAG000000148186 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000278938 retrocopies



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