RetrogeneDB ID: | retro_pcap_83 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_4719:82177..82496(+) | ||
Located in intron of: | ENSPCAG00000014400 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSPCAG00000014595 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 51.75 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ASVSELAC-IYSALILHDDEVTVT-EDKINALIKAAGVNVEPFWPGLFAKALA-NVNIGSLICNVGAGGP |
A..SEL...IY.ALILH..EV..T....IN.L.KAA.VNVEPF..GL.AK.L..NVN.GSL.C.VGAGGP | |
Retrocopy | ATLSELTA<IYLALILHNGEVAIT>DHEINVLVKAATVNVEPFCNGLSAKPLG>NVNKGSLVCSVGAGGP |
Parental | APAPGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGL |
A.A..A.....P..S......E.KK.....E.S.....D.GFGL | |
Retrocopy | ATAAHARTCFSPLQSPLRRKWEAKK---EREQSNNA--DVGFGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |