RetrogeneDB ID: | retro_hsap_3392 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:151145462..151145800(-) | ||
Located in intron of: | ENSG00000253921 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSG00000137818 | ||
Aliases: | RPLP1, LP1, P1, RPP1 | ||
Description: | ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372] |
Percent Identity: | 72.81 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPF-WPGLFAKALANVNIGSLICNVGAGGPA |
MAS.SELAC.Y.ALILHDDEV...E..IN.LIKAA.VNVEPF.WPGLF.KALANVNIGSLICNVGA.... | |
Retrocopy | MASISELACVYLALILHDDEVIIMEVNINTLIKAASVNVEPF<WPGLFGKALANVNIGSLICNVGAXXXX |
Parental | PAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF |
............PS.AAA.AEEKK.EAKKEESEESDDDMGFGLF | |
Retrocopy | XXXXXXXXXXXXPSIAAASAEEKKMEAKKEESEESDDDMGFGLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 1 .05 RPM | 427 .30 RPM |
bodymap2_adrenal | 0 .78 RPM | 725 .01 RPM |
bodymap2_brain | 0 .47 RPM | 87 .55 RPM |
bodymap2_breast | 0 .74 RPM | 301 .89 RPM |
bodymap2_colon | 0 .14 RPM | 579 .73 RPM |
bodymap2_heart | 0 .17 RPM | 216 .12 RPM |
bodymap2_kidney | 0 .14 RPM | 277 .51 RPM |
bodymap2_liver | 0 .19 RPM | 291 .89 RPM |
bodymap2_lung | 0 .07 RPM | 786 .06 RPM |
bodymap2_lymph_node | 0 .20 RPM | 987 .56 RPM |
bodymap2_ovary | 0 .15 RPM | 567 .51 RPM |
bodymap2_prostate | 1 .09 RPM | 839 .59 RPM |
bodymap2_skeletal_muscle | 0 .69 RPM | 1616 .35 RPM |
bodymap2_testis | 1 .34 RPM | 367 .99 RPM |
bodymap2_thyroid | 0 .51 RPM | 263 .03 RPM |
bodymap2_white_blood_cells | 0 .26 RPM | 956 .87 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_151124 | 280 libraries | 390 libraries | 1048 libraries | 96 libraries | 15 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .11 RPM |
CEU_NA11843 | 1 .14 RPM |
CEU_NA11930 | 0 .78 RPM |
CEU_NA12004 | 0 .65 RPM |
CEU_NA12400 | 0 .35 RPM |
CEU_NA12751 | 0 .70 RPM |
CEU_NA12760 | 0 .54 RPM |
CEU_NA12827 | 0 .90 RPM |
CEU_NA12872 | 0 .46 RPM |
CEU_NA12873 | 0 .51 RPM |
FIN_HG00183 | 0 .69 RPM |
FIN_HG00277 | 0 .55 RPM |
FIN_HG00315 | 0 .55 RPM |
FIN_HG00321 | 0 .97 RPM |
FIN_HG00328 | 0 .47 RPM |
FIN_HG00338 | 0 .89 RPM |
FIN_HG00349 | 0 .54 RPM |
FIN_HG00375 | 0 .81 RPM |
FIN_HG00377 | 0 .23 RPM |
FIN_HG00378 | 0 .64 RPM |
GBR_HG00099 | 0 .46 RPM |
GBR_HG00111 | 0 .75 RPM |
GBR_HG00114 | 1 .18 RPM |
GBR_HG00119 | 0 .79 RPM |
GBR_HG00131 | 0 .55 RPM |
GBR_HG00133 | 0 .34 RPM |
GBR_HG00134 | 0 .52 RPM |
GBR_HG00137 | 0 .55 RPM |
GBR_HG00142 | 0 .75 RPM |
GBR_HG00143 | 0 .41 RPM |
TSI_NA20512 | 0 .93 RPM |
TSI_NA20513 | 0 .58 RPM |
TSI_NA20518 | 0 .53 RPM |
TSI_NA20532 | 0 .37 RPM |
TSI_NA20538 | 0 .46 RPM |
TSI_NA20756 | 0 .64 RPM |
TSI_NA20765 | 0 .23 RPM |
TSI_NA20771 | 0 .79 RPM |
TSI_NA20786 | 0 .58 RPM |
TSI_NA20798 | 0 .31 RPM |
YRI_NA18870 | 0 .17 RPM |
YRI_NA18907 | 0 .69 RPM |
YRI_NA18916 | 0 .69 RPM |
YRI_NA19093 | 0 .47 RPM |
YRI_NA19099 | 0 .51 RPM |
YRI_NA19114 | 0 .71 RPM |
YRI_NA19118 | 0 .48 RPM |
YRI_NA19213 | 0 .43 RPM |
YRI_NA19214 | 0 .54 RPM |
YRI_NA19223 | 0 .32 RPM |