RetrogeneDB ID: | retro_rnor_2934 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:65575446..65575725(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rplp1 | ||
Ensembl ID: | ENSRNOG00000013874 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P19944] |
Percent Identity: | 77.42 % |
Parental protein coverage: | 81.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAP |
MASVS.L.CIYSALILHD.EVTVTEDKIN.LIKAAGVNVEPFWPGLFA.ALANVNIGSLI.NVGAGGPAP | |
Retrocopy | MASVSKLTCIYSALILHDNEVTVTEDKINVLIKAAGVNVEPFWPGLFAEALANVNIGSLIYNVGAGGPAP |
Parental | AAGAAPAGGPAPSAAAAPAEEKK |
.A.AAPA......A.....EE.. | |
Retrocopy | SAAAAPAEEKKVEAKKEESEESE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 114 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 133 .35 RPM |
SRP017611_liver | 0 .00 RPM | 77 .86 RPM |