RetrogeneDB ID: | retro_btau_615 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:28082104..28082326(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP1 | ||
Ensembl ID: | ENSBTAG00000018320 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:Q56K14] |
Percent Identity: | 68.42 % |
Parental protein coverage: | 64.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SVSELACIYSALILHDDEVTVTEDKINALIK-AAGVNVEPFWPGLFAKALANVNIGSLICNVG-AGGPAP |
S.SEL.CIY..LIL..DEV.VT....N.LI..AA.VNV.PFWPGLFAKALANVNI..LI.N.G.AGGPAP | |
Retrocopy | SISELTCIYPTLILCKDEVPVT*SMVNTLIS>AANVNVKPFWPGLFAKALANVNIETLIYNTG<AGGPAP |
Parental | AAGAAP |
..G.AP | |
Retrocopy | TGGSAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 269 .21 RPM |
ERP005899_muscle | 0 .05 RPM | 1805 .18 RPM |
SRP017611_brain | 0 .00 RPM | 155 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 405 .12 RPM |
SRP017611_liver | 0 .00 RPM | 302 .94 RPM |
SRP030211_testis | 0 .03 RPM | 381 .88 RPM |