RetrogeneDB ID: | retro_hsap_3112 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:153472431..153473153(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000243417 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSG00000145425 | ||
Aliases: | RPS3A, FTE1, MFTL, S3A | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 84.84 % |
Parental protein coverage: | 92.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDV |
VD..SKKDWYDVKAPAMFNIRNIGKTLVT.T.GTKIASDGLKGRVFE.SLADLQN.EVAFRKFKLIT..V | |
Retrocopy | VDLVSKKDWYDVKAPAMFNIRNIGKTLVTSTEGTKIASDGLKGRVFEMSLADLQNYEVAFRKFKLIT*GV |
Parental | QGKNCLTNFHGMDLTRDKMCSMVKKWQT-MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQ |
Q.K..L.NFH.MDLT...MCSMVKKWQT.MIEAHVDVKTTDGYLL.LFC..FTKK.NNQI.KTSYAQH.Q | |
Retrocopy | QEK--LPNFHSMDLTCGRMCSMVKKWQT<MIEAHVDVKTTDGYLLCLFCTAFTKKHNNQIWKTSYAQHKQ |
Parental | VRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLME |
V.QI.KKMMEIMTREVQ.NDLKEVVNKLIPDSIGKDI.KA.QSIY.L.DVF.RKVKMLKK.KFELG.LME | |
Retrocopy | VCQIWKKMMEIMTREVQRNDLKEVVNKLIPDSIGKDIDKAYQSIYSLNDVFIRKVKMLKKTKFELGNLME |
Parental | LHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
LHGEGSSSGKATG.ETG.KVE.ADGYEPPVQE.V | |
Retrocopy | LHGEGSSSGKATGEETGSKVE*ADGYEPPVQECV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 165 .82 RPM |
bodymap2_adrenal | 0 .29 RPM | 364 .03 RPM |
bodymap2_brain | 0 .14 RPM | 75 .31 RPM |
bodymap2_breast | 0 .00 RPM | 171 .42 RPM |
bodymap2_colon | 0 .02 RPM | 412 .69 RPM |
bodymap2_heart | 0 .00 RPM | 106 .78 RPM |
bodymap2_kidney | 0 .06 RPM | 159 .90 RPM |
bodymap2_liver | 0 .00 RPM | 109 .78 RPM |
bodymap2_lung | 0 .12 RPM | 488 .03 RPM |
bodymap2_lymph_node | 0 .49 RPM | 443 .21 RPM |
bodymap2_ovary | 0 .00 RPM | 526 .47 RPM |
bodymap2_prostate | 0 .05 RPM | 540 .27 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 86 .34 RPM |
bodymap2_testis | 0 .75 RPM | 259 .98 RPM |
bodymap2_thyroid | 0 .24 RPM | 233 .87 RPM |
bodymap2_white_blood_cells | 0 .39 RPM | 665 .11 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CPG | POLR2A | 4:153473413..153473903 |
ENCFF002CQM | POLR2A | 4:153473792..153474272 |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_2570 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .90 RPM |
CEU_NA11843 | 0 .77 RPM |
CEU_NA11930 | 0 .85 RPM |
CEU_NA12004 | 2 .01 RPM |
CEU_NA12400 | 0 .42 RPM |
CEU_NA12751 | 1 .89 RPM |
CEU_NA12760 | 1 .35 RPM |
CEU_NA12827 | 0 .90 RPM |
CEU_NA12872 | 1 .09 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .93 RPM |
FIN_HG00277 | 0 .89 RPM |
FIN_HG00315 | 2 .43 RPM |
FIN_HG00321 | 1 .18 RPM |
FIN_HG00328 | 1 .18 RPM |
FIN_HG00338 | 0 .51 RPM |
FIN_HG00349 | 1 .76 RPM |
FIN_HG00375 | 2 .40 RPM |
FIN_HG00377 | 1 .89 RPM |
FIN_HG00378 | 1 .59 RPM |
GBR_HG00099 | 0 .64 RPM |
GBR_HG00111 | 1 .42 RPM |
GBR_HG00114 | 1 .16 RPM |
GBR_HG00119 | 1 .03 RPM |
GBR_HG00131 | 1 .67 RPM |
GBR_HG00133 | 1 .76 RPM |
GBR_HG00134 | 1 .05 RPM |
GBR_HG00137 | 2 .14 RPM |
GBR_HG00142 | 1 .14 RPM |
GBR_HG00143 | 1 .21 RPM |
TSI_NA20512 | 2 .23 RPM |
TSI_NA20513 | 0 .73 RPM |
TSI_NA20518 | 1 .03 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 1 .98 RPM |
TSI_NA20756 | 0 .96 RPM |
TSI_NA20765 | 0 .60 RPM |
TSI_NA20771 | 0 .82 RPM |
TSI_NA20786 | 0 .42 RPM |
TSI_NA20798 | 0 .72 RPM |
YRI_NA18870 | 1 .02 RPM |
YRI_NA18907 | 1 .11 RPM |
YRI_NA18916 | 0 .67 RPM |
YRI_NA19093 | 1 .35 RPM |
YRI_NA19099 | 1 .70 RPM |
YRI_NA19114 | 0 .89 RPM |
YRI_NA19118 | 1 .43 RPM |
YRI_NA19213 | 0 .91 RPM |
YRI_NA19214 | 1 .06 RPM |
YRI_NA19223 | 1 .11 RPM |