Parental gene:

ENSETEG00000005656

Aliases:None
Description:None
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_295741:1753..4224(-)


>ENSETEG00000005656
ATGGAGGCTGTCGCGGAGAAGAAGAAGGCGGCCCCTGCTGTTCCAGAGACCCTTAAGAAAAAGCGAAGGAATTTCGCAGA
ACTAAAGATCAAACGCCTCAGAAAGAAGTTTGCCCAAAAGATGCTTCGAATGGCAAGGAGGAAGCTTATCTACGAGAAAG
CTAAGCACTATCACAAGGAATACAGGCAGATGTACAGAACTGAAATCCGAATGGCTCGGATGGCGAGGAAAGCTGGCAAC
TTCTATGTGCCTGGAGAGCCCAAGCTGGCGTTCGTTATCAGGATCAGAGGTATCAATGGTGTGAGCCCCAAGGTTCGCAA
AGTGCTGCAGCTTCTTCGCCTTCGCCAGATTTTCAATGGCGCCTTTGTTAAGCTTAACAAGGCTTCAATTAACATGCTGA
GGATTGTGGAACCATACATTGCATGGGGGTACCCAAACCTGAAGTCGGTGAATGAACTCATCTACAAGCGTGGTTACGGC
AAAATCAATAAGAAGCGTATTGCCTTAACAGATAACACTCTGATTGCACGGTCTCTTGGTAAATATGGTATCATCTGCAT
GGAGGATCTGATTCATGAGATCTATACTGTTGGGAAACGTTTCAAAGAAGCAAATAACTTCCTGTGGCCCTTCAAATTAT
CTTCTCCGCGAGGTGGGATGAAGAAAAAGACCACCCATTTCGTAGAAGGTGGAGATGCAGGCAACAGGGAAGACCAGATC
AACAGACTTATTAGAAGGATGAACTAA

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000004140 ortholog_one2one 18 retrogenes
retro_cpor_1056, retro_cpor_1190, retro_cpor_1342, retro_cpor_1347, retro_cpor_1348, retro_cpor_1366, retro_cpor_1418, retro_cpor_1449, retro_cpor_1452, retro_cpor_1453, retro_cpor_187, retro_cpor_209, retro_cpor_245, retro_cpor_266, retro_cpor_397, retro_cpor_458, retro_cpor_506, retro_cpor_640,
Erinaceus europaeus ENSEEUG00000010307 ortholog_one2many 3 retrogenes
retro_eeur_354, retro_eeur_420, retro_eeur_55,
Echinops telfairi ENSETEG00000002419 within_species_paralog 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Latimeria chalumnae ENSLACG00000003571 ortholog_one2many 1 retrogene
retro_lcha_63,
Macropus eugenii ENSMEUG00000016319 ortholog_many2many 9 retrogenes
retro_meug_1002, retro_meug_1449, retro_meug_1942, retro_meug_1947, retro_meug_60, retro_meug_760, retro_meug_84, retro_meug_968, retro_meug_99,
Monodelphis domestica ENSMODG00000007136 ortholog_many2many 4 retrogenes
retro_mdom_1341, retro_mdom_1998, retro_mdom_371, retro_mdom_66,
Mustela putorius furo ENSMPUG00000010240 ortholog_one2one 15 retrogenes
retro_mputfur_1004, retro_mputfur_1031, retro_mputfur_1034, retro_mputfur_1035, retro_mputfur_1156, retro_mputfur_1168, retro_mputfur_1384, retro_mputfur_1454, retro_mputfur_1481, retro_mputfur_390, retro_mputfur_410, retro_mputfur_545, retro_mputfur_839, retro_mputfur_929, retro_mputfur_982,
Nomascus leucogenys ENSNLEG00000026615 ortholog_one2one 8 retrogenes
retro_nleu_1012, retro_nleu_1459, retro_nleu_1696, retro_nleu_1853, retro_nleu_2479, retro_nleu_2603, retro_nleu_3, retro_nleu_901,
Sorex araneus ENSSARG00000001088 ortholog_one2one 3 retrogenes
retro_sara_268, retro_sara_310, retro_sara_623,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_175 73.12 100.00
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2. retro_etel_185 96.27 64.52
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3. retro_etel_265 76.79 94.35
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4. retro_etel_316 88.52 72.98
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5. retro_etel_375 67.42 52.82
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6. retro_etel_402 86.00 99.60
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7. retro_etel_519 83.53 100.00
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8. retro_etel_532 84.43 66.94
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9. retro_etel_554 83.23 62.10
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10. retro_etel_610 62.72 65.73
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11. retro_etel_793 66.67 59.68
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12. retro_etel_865 70.39 81.45
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13. retro_etel_869 82.79 86.69
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14. retro_etel_877 70.56 78.23
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15. retro_etel_887 81.71 98.39
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16. retro_etel_889 73.45 71.37
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17. retro_etel_992 72.80 95.16
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18. retro_etel_993 88.19 50.40
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19. retro_etel_1099 81.21 59.68
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20. retro_etel_1120 68.42 52.42
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21. retro_etel_1154 77.33 97.58
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22. retro_etel_1158 74.25 66.94
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23. retro_etel_1333 61.07 51.21
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24. retro_etel_1370 76.80 99.19
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25. retro_etel_1553 80.74 54.44
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26. retro_etel_1642 77.08 100.00
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27. retro_etel_1708 67.88 64.92
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28. retro_etel_1720 86.23 99.60
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29. retro_etel_1891 67.40 89.52
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30. retro_etel_2042 92.77 66.53
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31. retro_etel_2044 80.29 83.06
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32. retro_etel_2118 67.92 84.27
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33. retro_etel_2149 74.34 60.89
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Download FASTA sequences of all ENSETEG00000005656 retrocopies