RetrogeneDB ID: | retro_cpor_266 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:49613184..49613543(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCPOG00000004140 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.64 % |
Parental protein coverage: | 57.49 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VNMLRIVEPYI-AWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKYGIICME-DLIHEIYTV |
..ML...E.Y....G.PNLKS.N.LIY...YG.INK........S.I..SLGKYGI.CM...LIHEI.TV | |
Retrocopy | LSMLKNMELYVYCMGCPNLKSANKLIYQCDYGEINKN*TVWVGDSVIM*SLGKYGIFCMG<ELIHEIDTV |
Parental | GKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
GK.FKE.NNFLWPFKLSSP.G..KK..THFV.GGD.GNREDQINRL.RR.N | |
Retrocopy | GKCFKEENNFLWPFKLSSP*GRIKKRITHFVAGGDTGNREDQINRLVRRVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 270 .09 RPM |
SRP017611_liver | 0 .00 RPM | 197 .22 RPM |
SRP040447_lung | 0 .00 RPM | 309 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 315 .34 RPM |