RetrogeneDB ID: | retro_cpor_1347 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_70:9073904..9074310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCPOG00000004140 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.61 % |
Parental protein coverage: | 66.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LRKARRKLIYEKARHYHKEYRQMYRTEIRMARMARKAGNFYVPAE-PKLAFVIRIRGINGVS-PKVRK-V |
L..ARRKLI.E...H..K.YRQ.YRTEI..A...RK..N.YVPA..PK..F.I...G.N.V..P.V...V | |
Retrocopy | LQMARRKLICERNMHCQK*YRQIYRTEIQKAEVTRKLSNIYVPAQ>PKWHF-IQTKGTNNVN<PRVQR<V |
Parental | LQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNE-LIYKRGYGKINKKRIALTDNSLIAR |
LQLL.L..IF..TFVKLNK.SV..L..VE.Y.A.GY.N..SVN..LIYK...GKI....I..T.N.LIA. | |
Retrocopy | LQLLCLHRIFSATFVKLNKPSVHILSTVETYVA*GYLNMHSVND<LIYKHHNGKIIRMQITFTHNTLIAQ |
Parental | S |
S | |
Retrocopy | S |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 270 .09 RPM |
SRP017611_liver | 0 .00 RPM | 197 .22 RPM |
SRP040447_lung | 0 .00 RPM | 309 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 315 .34 RPM |