RetrogeneDB ID: | retro_cpor_1452 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_86:425674..426157(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCPOG00000004140 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.58 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LRKARRKLIYEKARHYHKEYRQMYRTEIRMARMARK-AGNFYVPAEPKLA-FVIRIR-GINGVSPKVRKV |
L.KARR.LI.EKARH..K.................K..G.FY.PAEPK.A.F.I.IR.G.NGVSPKVRKV | |
Retrocopy | LQKARRRLICEKARHVLKRPDRCTELKFEQRGWHKKLCGSFYEPAEPKPA<FLI*IR<GVNGVSPKVRKV |
Parental | LQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAW-GYPNLKSVNELIYKRGYGKINKKRIALTDNSLIAR |
.QLL.L.QIF.G.F.KLNKASV..LR.VEP.I.W.G.PNL.S..ELI.K...GK...KRIAL.....I.. | |
Retrocopy | SQLLHLHQIFSGAFPKLNKASVKPLRTVEPHITW<GSPNLRSISELICKCDDGKSRQKRIALAGKVSIVW |
Parental | SLGKYGIICMEDLIHEIYTVGKRFK |
SLGKY...CMEDL.H.IY.VGK.F. | |
Retrocopy | SLGKYSTVCMEDLTHKIYMVGKCFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 270 .09 RPM |
SRP017611_liver | 0 .00 RPM | 197 .22 RPM |
SRP040447_lung | 0 .00 RPM | 309 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 315 .34 RPM |