RetrogeneDB ID: | retro_etel_2118 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_6549:876..1504(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000010456 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.92 % |
Parental protein coverage: | 84.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | AVAEKKKAAPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRMARRKLIYEKAKHYHKEYRQMYRTEIRMA |
AV.EKKK..PAVPETLKKKR.N.AELKIK..RKKFAQKML..ARRKLI.EKA.H.HKE.RQ...T.I... | |
Retrocopy | AVTEKKKKVPAVPETLKKKRKNVAELKIKHPRKKFAQKMLQKARRKLIHEKAPHHHKECRQRDGTGIQTS |
Parental | RMARKAGNFYVPGEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIF-NGAFVKLNKASINMLRIVEPYIA |
..ARKAG..YVPGEP.L..VIRI.G.NGVSPK.RKVLQLLRLRQIF..G.FVKLN.AS..M.R.V.PYI. | |
Retrocopy | QRARKAGTLYVPGEPTLTSVIRITGANGVSPKFRKVLQLLRLRQIF<RGTFVKLNMASKKMRRTVKPYIY |
Parental | WGYPNLKSVNELIY-KRGYGKINKKRIALTDNTLIARSLG-KYGIICMEDLIHEIYTVGKRFKEANNFLW |
...P.LKS..ELIY.KRG.GKI..KR...TD.T..A.SLG...GII..EDL..E..TVGKRFKEAN.FLW | |
Retrocopy | GEHPRLKSTKELIY>KRGSGKIS*KRLTRTDGTSMA*SLG>SMGIIRREDLLPET*TVGKRFKEANDFLW |
Parental | PF |
.F | |
Retrocopy | AF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |