RetrogeneDB ID: | retro_cpor_245 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:6751056..6751527(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCPOG00000004140 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.27 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | KLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGT-FVKLNKASVNMLRIVEPYIAW-GYPNLKSVNELIY |
KL.FVI.I.G..GV.PKV.KVL.LLRL.Q.F.G..FVK.NKASV.MLRIVEPYI.W.GYP...SV.ELI. | |
Retrocopy | KLVFVIWIKGVKGVNPKVHKVLLLLRLCQHFDGS<FVKCNKASVSMLRIVEPYI*W<GYPSQRSVKELIH |
Parental | KRGYGKINKKRIALTDNSLIA-RSLGKYGIICMEDLIHEIYTVGKRFKEANNFL-WPFKLSSPRGGMKK- |
K.G..KIN.K.IALTDNSLI....LGK..II.MEDLI.EI.T..K.FK.AN.F...PFKLS.P..GMKK. | |
Retrocopy | KCGCDKIN-K*IALTDNSLIT<LILGKQSIISMEDLINEICTAEKLFKVANSFV<VPFKLSFP*RGMKK< |
Parental | KTTHFVEGGDAGNRE-DQINRLIRRMN |
K...F..GGD.GN.E.DQ.NRL.RRMN | |
Retrocopy | KDPYFMPGGDVGNGE<DQTNRL-RRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 270 .09 RPM |
SRP017611_liver | 0 .00 RPM | 197 .22 RPM |
SRP040447_lung | 0 .00 RPM | 309 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 315 .34 RPM |