RetrogeneDB ID: | retro_cpor_1348 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_70:9220298..9220802(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7 | ||
Ensembl ID: | ENSCPOG00000004140 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.8 % |
Parental protein coverage: | 82.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ARRKLIYEK-ARHYHKEYRQMYRTEIRMARMAR-KAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLL |
ARRKLIYEK..RH.H..YR.MYRTEI..A.M.R.K.G..Y.PAEPKLAFVI..R...GV.P...KVLQ.L | |
Retrocopy | ARRKLIYEK<TRHCHNKYR*MYRTEIQKAEMTR<KLGHIYIPAEPKLAFVIQTRSPKGVNPNAHKVLQFL |
Parental | RLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNE-LIYKRGYGKINKKRIALTDNSLIARSLGK |
.L..IFNGTFVKL.KAS..ML.IV....A..YPNL..VN..LIY.....K.......L.......R.L.. | |
Retrocopy | YLCKIFNGTFVKLSKASTYMLSIVRTNVA*EYPNLQLVND<LIYRVTMAKSLRCKLHLKIFH*LLR-LVM |
Parental | YGIICMEDLIHEIYTVGKRFKEANNFLWPFKLS |
YGI.CME.LIHEI..VGK.FK..NNFLW..KLS | |
Retrocopy | YGITCMEALIHEICDVGKYFKGSNNFLWSLKLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 185 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 270 .09 RPM |
SRP017611_liver | 0 .00 RPM | 197 .22 RPM |
SRP040447_lung | 0 .00 RPM | 309 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 315 .34 RPM |