RetrogeneDB ID: | retro_eeur_55 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2863:132274..132697(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000010307 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.76 % |
Parental protein coverage: | 56.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KKKKMVPGVPETLKKKRRSFAELKIKRMRKKFAQKMLRKARRKLIYEKAKYYHKEYSQMYRTEIRMARMA |
.KKK.V..V.ETLKKK.R.FA.LKIK..R..FAQKML...RRKLIYE.AK.YHKEY.QMYRTEI.MA.MA | |
Retrocopy | EKKKKVLAVLETLKKKQRNFAVLKIKCLRQEFAQKMLQQVRRKLIYEQAKHYHKEYRQMYRTEI*MAWMA |
Parental | RKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYP |
RKAGNF.VP.EPKL.F.IRI..I.GVSPKV.KVLQL..L.QIFN.TFVKLNK..INMLR..EP.IAWGYP | |
Retrocopy | RKAGNFCVPVEPKLTFFIRIGAIKGVSPKV*KVLQLPHLQQIFNDTFVKLNKPPINMLRTEEPSIAWGYP |
Parental | N |
N | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 294 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 720 .71 RPM |
SRP017611_liver | 0 .00 RPM | 434 .09 RPM |