RetrogeneDB ID: | retro_etel_1370 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_255637:4143..4878(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000001562 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.8 % |
Parental protein coverage: | 99.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MEAVAEKKKAAPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRMARRKLIYEKAKHYHKEYRQMYRTEIR |
ME.V.EKKK..P..PETLKKKRR.FAELKIKRLRKKF.QKML..AR.K..Y.KA.H.HKE.RQM.RT.IR | |
Retrocopy | MEGVVEKKKVPP-IPETLKKKRRYFAELKIKRLRKKFIQKMLQKARMKVLYKKAEHDHKECRQMDRTAIR |
Parental | MARMARKAGNFYVPGEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGAFVKLNKASINMLRIVEPYI |
MA.MARKAG.F.VPGEPKLAFV.RIRG.NGVSPKVRK.LQLL.L..IF.G.FV.LNKAS.NMLRIVEP.I | |
Retrocopy | MAPMARKAGSFCVPGEPKLAFVLRIRGDNGVSPKVRKMLQLLCLC*IFKGTFVNLNKASVNMLRIVEPCI |
Parental | AW-GYPNLKSVNE-LIYKRGYGKINKKRIALTDN-TLIARSLGKYGIIC-MEDLIHEIYTVGKRFKEANN |
AW.GYP.LKSVNE..IYK.G.GKINKK.IALTDN..LI.RSL..YG.IC..EDLIHE.YT.GK.FKEA.N | |
Retrocopy | AW<GYPKLKSVNE>EIYKCGDGKINKKHIALTDN>PLIVRSLSQYGTIC<QEDLIHELYTAGKCFKEARN |
Parental | FLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRR |
FLW.F..S.PRGGMKKKTTHFVEGGDAGNREDQ.N.LIRR | |
Retrocopy | FLWSFQ*SFPRGGMKKKTTHFVEGGDAGNREDQSNTLIRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |