RetrogeneDB ID: | retro_etel_887 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_180150:407..1143(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000003308 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.71 % |
Parental protein coverage: | 98.39 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | AEKKKAAPA-VPETLKKKRRNFAELKIKRLRKKFAQKMLRMARRKLIYEKAKHYHKEYRQMYRTEIRMAR |
AEKKKA....VPETLKKK.RNFAELKIK.L.KKFAQKML..ARRKLIYEKA.HYHKEYRQMYRTEI.MAR | |
Retrocopy | AEKKKALAV>VPETLKKK*RNFAELKIKCLTKKFAQKMLQKARRKLIYEKA*HYHKEYRQMYRTEIQMAR |
Parental | MARKAGNFYVPGEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGAFVKLNKASINMLRIVEPYIAWG |
MARKAGNFYVP.EPKLAFV.RIRGINGVSPKV.KVLQLLRLRQI.NG..VKLNKAS...LRIVE..IAWG | |
Retrocopy | MARKAGNFYVPREPKLAFVLRIRGINGVSPKV*KVLQLLRLRQISNGTCVKLNKASNSTLRIVEQCIAWG |
Parental | YPNLKSVNELIY-KRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFK |
Y.NLKSVNE......G.GKI.KKR.ALTDN.L.A.SLG.YG.IC.ED.IHE.YTVGK.FKEA.NFLWPFK | |
Retrocopy | YLNLKSVNEVSHLQGGDGKIKKKRVALTDNPLVAQSLGQYGTICTEDRIHELYTVGKCFKEAHNFLWPFK |
Parental | LSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
.SSPRGG.KKKTTHFVEGGDAGNREDQ.NRLIRRMN | |
Retrocopy | *SSPRGGVKKKTTHFVEGGDAGNREDQSNRLIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |