RetrogeneDB ID: | retro_eeur_420 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_294139:1904..2314(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000012160 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000010307 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.57 % |
Parental protein coverage: | 56.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MEGVEKKKKMVPGVPETLKKKRRSFAELKIKRMRKKFAQKMLRKARRKLIYEKAKYYHKEYSQMYRTEIR |
MEGVE.KK..V.G.PETLKKK.RSF.ELKIK.MRKKFAQKML..ARRKLI.EKAK.YHKEYS..YRTEI. | |
Retrocopy | MEGVEEKK--VSGLPETLKKKHRSFDELKIKHMRKKFAQKML*EARRKLI*EKAKCYHKEYSHTYRTEIQ |
Parental | MARMARKAGNFYVPAEPKLA-FVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPY |
MA..ARKAGNFY..AEPKLA..VIRIRGI.GVSPKVRKVLQLL.L..I.NGTFVKLNKASIN.LRI...Y | |
Retrocopy | MAQVARKAGNFYDLAEPKLA<LVIRIRGISGVSPKVRKVLQLLCL*LILNGTFVKLNKASINTLRIAWGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 294 .73 RPM |
SRP017611_kidney | 0 .19 RPM | 720 .71 RPM |
SRP017611_liver | 0 .00 RPM | 434 .09 RPM |