RetrogeneDB ID: | retro_etel_1091 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_210217:4075..5070(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 97.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MATLKEQLIQNLLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSL |
MATLK.QLIQN.LKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVD.MEDKLKGEMMDLQHGSL | |
Retrocopy | MATLKDQLIQNPLKEEQAPQNKITVVGVGAVGMACAISILMKDLADELALVDAMEDKLKGEMMDLQHGSL |
Parental | FLRTPKIVSGKDYDVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPV |
FLRTPKIVSGKDY.VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPV | |
Retrocopy | FLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPV |
Parental | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH.WVLGEHGDSSVPVWSGVNVAGVS | |
Retrocopy | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHRWVLGEHGDSSVPVWSGVNVAGVS |
Parental | LKNLHPALGTDGDKEQWKEVHKQVVESAYEVIKLKGYTSW-AIGLSVADLAESIMKNLRRVHPISTMIKG |
LKNLHPALGTDGDKEQWKEVHKQV.ESAYEVIKLKGYTSW.AIGLSVADLAESIMKNLRRVHPISTMIKG | |
Retrocopy | LKNLHPALGTDGDKEQWKEVHKQVIESAYEVIKLKGYTSW<AIGLSVADLAESIMKNLRRVHPISTMIKG |
Parental | LYGINEDVFLSVPCILGQNGISDVVKVTLTTEEEARLKKSADTLWGIQKELQF |
LYGINEDVFLSVPCILGQNGISD.VKVTLTTEEEA.LKKSADTLWGIQKELQF | |
Retrocopy | LYGINEDVFLSVPCILGQNGISDLVKVTLTTEEEAQLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |