RetrogeneDB ID: | retro_meug_181 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_5221:77400..77903(-) | ||
Located in intron of: | ENSMEUG00000006892 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.84 % |
Parental protein coverage: | 50.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFL |
T.KD.LILNVLKEDQV..NKITVVGVG.V.MA.AIS.LTKEL.DELALV.VI.DKLKGEMM.LQH.S.F. | |
Retrocopy | TLKDHLILNVLKEDQVF*NKITVVGVGVVVMAYAISILTKELTDELALVYVIKDKLKGEMMNLQHDSVFF |
Parental | KTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDI |
KTPKIVSGKDYSV.ANS.LVIVTA.A.QQEGESRLNLVQ.NVNIFKF.IPNIVKYSPNCKLLIV.NPVD. | |
Retrocopy | KTPKIVSGKDYSVNANSELVIVTARAHQQEGESRLNLVQHNVNIFKFVIPNIVKYSPNCKLLIVYNPVDV |
Parental | LTYVA-WKLSGFPKNRVIGSGCNLDSARF |
LTYVA..KLS.FPKN..IGSGCNL.SARF | |
Retrocopy | LTYVA<LKLSDFPKNGIIGSGCNLYSARF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |