RetrogeneDB ID: | retro_meug_1082 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold281740:107..1062(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 63.98 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | KEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSGKD- |
KED....NKIT..GV.AVGMA.AI..L...LA.ELALV.V.E.K...EMM.LQHGSLFLKTPKI.S.... | |
Retrocopy | KED*IHHNKITIAGVSAVGMA*AINILM*DLA*ELALVVVVEEKPR-EMMHLQHGSLFLKTPKIISLRG> |
Parental | YSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN-PVDILTYVAWKLS |
Y.VT.NS.LV.VTAGA.Q.EGES..NLVQ...NIFK..IP.IVKY..N.......N.PVDILTY.A.KLS | |
Retrocopy | YNVTVNSNLVVVTAGAYQ*EGESNFNLVQHDMNIFKLFIPSIVKYNNNYSCILLPN<PVDILTYEAYKLS |
Parental | GFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTD |
GFPKN..I.SGCNL.SA.F.YLMG.RLGVHS.SCH..VLGEH.DSSVP..S.VN.A..SLKNL...L.TD | |
Retrocopy | GFPKNHDIRSGCNLNSAHFHYLMGKRLGVHSSSCHERVLGEHRDSSVPL*SAVNVASLSLKNLYLVLRTD |
Parental | SDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVF-HS |
.D.E..K..HKQ...SAYEVIKLKGY.SWAIGLS....AE.IMKN.RRVH.ISTMIK........VF... | |
Retrocopy | VDSEI*KNDHKQWAKSAYEVIKLKGYISWAIGLSLVNAAEGIMKNHRRVHTISTMIKGLYGISEDVF>FG |
Parental | VSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
V...LG.N.I.DVVK..LN..E.SHLKKS...L.GIQKELQF | |
Retrocopy | VPCILG*NVILDVVKAILNQKEDSHLKKSADSLGGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |