RetrogeneDB ID: | retro_meug_1295 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold3590:6868..7866(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
M..TVKDQLILNVLKEDQV.QNKITVV...AVG.ACAIS.LT.ELADELALVDV.EDKLKGEMMD..HGS | |
Retrocopy | MTPTVKDQLILNVLKEDQVSQNKITVVLISAVGVACAISILTEELADELALVDVTEDKLKGEMMDFHHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAG-ARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCK-LLIVS |
LFLK...I.SGKDYSVTANS.LVIV.AG.ARQQEGES.LNLVQ.NVNIFKFIIPN.VKYSP.CK.L.I.S | |
Retrocopy | LFLKMTNIASGKDYSVTANSELVIVMAG<ARQQEGESHLNLVQHNVNIFKFIIPNTVKYSPYCK>LFIFS |
Parental | NPV-DILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNL |
NP..DILTYVAWKLSGFPKN.VI.SGCNLDSA.F..LMGE.LGVHS.SCHGWVLGE.GDSSVPVWSG.NL | |
Retrocopy | NPM<DILTYVAWKLSGFPKNHVIRSGCNLDSAHFHSLMGEKLGVHSSSCHGWVLGEYGDSSVPVWSGMNL |
Parental | AGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTM |
A.VSLK.LHPSL.TD..AE.WKDVHK.V.ESAY.VIKLK.YTS.AI.LSV.D.AESI..NL..VHPISTM | |
Retrocopy | ASVSLKKLHPSLRTDAGAEDWKDVHK*VFESAYKVIKLKAYTS*AISLSVVDVAESIVMNLMKVHPISTM |
Parental | IKXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
IK........VF.SV...LGQNGISDVVKVNLN.EEES.LKK...TLWGIQKELQF | |
Retrocopy | IKGLYGINEDVFLSVPCILGQNGISDVVKVNLNPEEESYLKKRADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |