RetrogeneDB ID: | retro_meug_971 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold24783:19056..19643(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.16 % |
Parental protein coverage: | 58.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVL-TKELADELALVDVIEDKLKGEMMDLQHG |
M.STVKDQLI.N..KE.Q.PQNKITVVGV..V.MACAIS.L.T..L.D.LALVDVIEDK.KG.MM.LQHG | |
Retrocopy | MSSTVKDQLIFNIIKEHQFPQNKITVVGVDVVAMACAISIL<TQQLVDKLALVDVIEDKQKG*MMGLQHG |
Parental | SLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN |
SLF.KT.KIVSGKDYS.T.N.KLVIV.AG..QQEGES.LNL...NVNIFK.IIPNI.KYSPN.K.LIVSN | |
Retrocopy | SLFIKTLKIVSGKDYSMTENLKLVIVMAGPHQQEGESCLNLI*HNVNIFKIIIPNISKYSPNYKVLIVSN |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGD |
PV.ILTYV.WKLSGFPK..VIGSGCNLDSA.F.YL.GE.L.VHS.SCH.WVLGEHGD | |
Retrocopy | PVNILTYVTWKLSGFPKDHVIGSGCNLDSACFSYLLGEILDVHSSSCHRWVLGEHGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |