RetrogeneDB ID: | retro_meug_590 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold142826:1034..1561(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 79.66 % |
Parental protein coverage: | 52.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AGARQQEGESRLNLVQRNVNI-FKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKNRVIGSGCN |
AG..QQ.GES.LNL.Q.NVNI.FK.I..N.VK.SPNCKLLIVS.PVDIL.YVAW.LS.FPKN..IGSG.N | |
Retrocopy | AGTCQQKGESCLNLLQGNVNI<FKCIVLNTVKHSPNCKLLIVSYPVDILIYVAWRLSDFPKNHIIGSGFN |
Parental | LDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKDVHKQV |
LDSA.F.YL.G.R.G.HS.S.HGWVLGEHGDSSVPVWSGVNLA.VSLKNLHP.LGTD.D.EN.KDVHKQV | |
Retrocopy | LDSACFCYLIGGRFGFHSSSFHGWVLGEHGDSSVPVWSGVNLASVSLKNLHPFLGTDADSEN*KDVHKQV |
Parental | VESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH |
VESAYEVIKLKGY.S.AIGLSVA.LAESIM.NLRRVH | |
Retrocopy | VESAYEVIKLKGYASCAIGLSVANLAESIMRNLRRVH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |