RetrogeneDB ID: | retro_meug_1419 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold39725:450..1090(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 80.09 % |
Parental protein coverage: | 64.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVK.QLILN.LKEDQVPQNKIT.VGV..VGM.C.IS.LTKEL.DELA..DVIEDKLKGEMM.LQ.GS | |
Retrocopy | MASTVKNQLILNILKEDQVPQNKITAVGVRGVGMTCGISILTKELTDELASIDVIEDKLKGEMMALQRGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVI-VTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSN |
LFLKTPKIVS.KDYSVTANSKLVI.V.A.....E..S.LNLVQRNVN.FKFIIPNIVKYSPN.KLLIVS. | |
Retrocopy | LFLKTPKIVSAKDYSVTANSKLVI>VEAHQQEGE--SCLNLVQRNVNVFKFIIPNIVKYSPN*KLLIVSK |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAG |
PVDILTY.AWK.SGF.K..VIGSGCNLDSARF.YLMGER.GVHS.S...WVLGEHGDSSVPVWS.VNLA. | |
Retrocopy | PVDILTYAAWKQSGFSKKCVIGSGCNLDSARFCYLMGERFGVHSSSGSEWVLGEHGDSSVPVWSSVNLAS |
Parental | VSLKNL |
VS...L | |
Retrocopy | VSKEPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |