RetrogeneDB ID: | retro_meug_1417 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold396659:244..808(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.98 % |
Parental protein coverage: | 56.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNL |
..AWKLSGFPKN.VIGS.CN..SA.F.YLMGE.LGVHS.SCHGWVLGEHGDSSVPVWSG.NLA.VSLKNL | |
Retrocopy | HMAWKLSGFPKNPVIGSSCNMHSACFHYLMGESLGVHSSSCHGWVLGEHGDSSVPVWSGMNLASVSLKNL |
Parental | HPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXX |
H.SLGTD.DAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVA.LA.SIMKNLRR.HPIST.IK...... | |
Retrocopy | HHSLGTDADAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVANLAKSIMKNLRRAHPISTIIKGLYGIN |
Parental | XXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
..VF.SV..VLGQNGISDVVKVNLN.EEESHLKKST.TLW.IQKELQF | |
Retrocopy | EDVFLSVPCVLGQNGISDVVKVNLNLEEESHLKKSTDTLWEIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |