RetrogeneDB ID: | retro_meug_1301 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold361602:8..520(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.91 % |
Parental protein coverage: | 51.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | TYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKN |
TYVAWKL.GFPKN.VIGSGCNLDSA.F.YLMG.RL.VHS.SCHGWVLGE.GD.SVPVW..VNLA.V.LKN | |
Retrocopy | TYVAWKLNGFPKNHVIGSGCNLDSAHFHYLMGKRLRVHSSSCHGWVLGEYGDFSVPVWNCVNLASVFLKN |
Parental | LHPSLGTDSDAENWKDVHKQ-VVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXX |
LHPSLGTD.DAENWKD.HKQ.VVESAYEVIKLKGY.SWAI.LSVADLAE.IMKNLRRVHPI.TMIK.... | |
Retrocopy | LHPSLGTDTDAENWKDAHKQ<VVESAYEVIKLKGYISWAIDLSVADLAENIMKNLRRVHPIFTMIKGLYG |
Parental | XXXXVFHSVSYVLGQNGISDVVKVNLNTEEES |
....VF.SV..V.GQN.IS.VVK..LN.EE.S | |
Retrocopy | INEDVFLSVPCVWGQNVISEVVKIILNMEEKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |