RetrogeneDB ID: | retro_meug_351 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold104026:5625..6414(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.51 % |
Parental protein coverage: | 78.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EMMDLQHGSLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN |
.MM.LQHG.LFLK.PKIVSGKDYSV.ANSKLVIV..GA.QQEGE..LNLV..NVNIFKFI.PNIVKYSPN | |
Retrocopy | KMMVLQHGGLFLKRPKIVSGKDYSVSANSKLVIVMTGAHQQEGETHLNLV*HNVNIFKFIFPNIVKYSPN |
Parental | CKLLIVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPV |
CKLLIVS.PVDILTYVAWKLSGFPKNRVIGSGCNLDSA.F.YL.GE.LGVHS.SCHGWVLGEHGDSSVPV | |
Retrocopy | CKLLIVSSPVDILTYVAWKLSGFPKNRVIGSGCNLDSAHFHYLLGEILGVHSSSCHGWVLGEHGDSSVPV |
Parental | WSGVNLAGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV |
WS.VNLAG.SLKN.HPSLGTD..AENWKDV.KQ.VESAYEVIKLKGYTSWAI.LSVA.LA.SIMKNLRRV | |
Retrocopy | WSDVNLAGASLKNFHPSLGTDALAENWKDVLKQIVESAYEVIKLKGYTSWAISLSVAYLAQSIMKNLRRV |
Parental | HPISTMIKXXXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTL |
.PIS.MIK........VF.SV..VL.QNGISDVVKVNLN.EEES.LKKST.TL | |
Retrocopy | YPISIMIKGLYDINEDVFLSVPCVLEQNGISDVVKVNLNPEEESCLKKSTDTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |