RetrogeneDB ID: | retro_meug_1747 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold563414:103..791(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 83.19 % |
Parental protein coverage: | 68.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LVDV-IEDKLKGEMMDLQHGSLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFK |
LVDV.IEDKLKG.MM.LQH.S.FLK..KIVSGKDYSV.ANSKLVIVTAGA.QQEGES.LNLVQ.NVNIFK | |
Retrocopy | LVDV<IEDKLKGGMMVLQHVSFFLKMLKIVSGKDYSVNANSKLVIVTAGAHQQEGESHLNLVQCNVNIFK |
Parental | -FII-PNIVKYSPNCKLLIVSNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCH |
.FII.PNI.KY..NCKLLIVS..VDILTYVAWKL.GFPKN.VI..GCNLDSA.F.YLMGERL.VHS.SCH | |
Retrocopy | >FII>PNIAKYNLNCKLLIVSSTVDILTYVAWKLCGFPKNHVIRCGCNLDSACFHYLMGERLDVHSSSCH |
Parental | GWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSV |
..V.GEHGDSSVPV..G.NLA.VSLKNLHPSLGTD.DAENWK.VHK.VVE.AYEVIKLKGYTSWAIGLSV | |
Retrocopy | R*VVGEHGDSSVPV*RGMNLASVSLKNLHPSLGTDADAENWKGVHK*VVENAYEVIKLKGYTSWAIGLSV |
Parental | ADLAESIMKNLRRVHPISTMIK |
.DLAE.IMKNLRRVHPISTMIK | |
Retrocopy | VDLAEGIMKNLRRVHPISTMIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |