RetrogeneDB ID: | retro_meug_2168 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold97844:3769..4762(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 82.88 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVKDQLILNVLKEDQVPQN.IT.VGVG.VGMA.A.S.LTKELADELAL.DVI.D.LKGEMMDL.HGS | |
Retrocopy | MASTVKDQLILNVLKEDQVPQNTITIVGVGTVGMARANSILTKELADELALLDVI*DHLKGEMMDLYHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNP |
LFLK.PKIVSGK.YS.T.NS.LVIV.A.A.QQEGES.LNLV..NVNIFKF.IPNIV.YSPNCKLLIVSNP | |
Retrocopy | LFLKMPKIVSGKHYSMTENSQLVIVMAEAHQQEGESHLNLV*HNVNIFKFVIPNIVEYSPNCKLLIVSNP |
Parental | VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGV |
VDILTYVAWKLSGFPKN.VIGSGCNLDSA.F.YL.GERLGVHS.SCHGWVLGEHGDS.VP.WSG.NLA.V | |
Retrocopy | VDILTYVAWKLSGFPKNCVIGSGCNLDSAHFFYLSGERLGVHSSSCHGWVLGEHGDSGVPAWSGMNLACV |
Parental | SLKNLHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKX |
SLKNLHPSLGTD.DAENWKDVHKQVVES.YEVIKLKGY.SW...LSVA.LAESIMKNLRRVHPISTMIK. | |
Retrocopy | SLKNLHPSLGTDVDAENWKDVHKQVVESTYEVIKLKGYSSWT--LSVAHLAESIMKNLRRVHPISTMIKG |
Parental | XXXXXXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
.......VF.SV..VLGQNGISDVVKVNLN.EE.SHLK....TLWGIQKE.QF | |
Retrocopy | LYSINEDVFLSVP*VLGQNGISDVVKVNLNPEEKSHLKRGADTLWGIQKEQQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |