RetrogeneDB ID: | retro_etel_1243 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_234615:3190..3882(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 59.49 % |
Parental protein coverage: | 70.18 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | ALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYDVTANSKLVIITAGAR-QQEGESRLNLVQRNVNIF |
.L..V..DKLK.EMMDLQ.GSLF.RTPK.V.GK..D..ANS.LVIIT..A.....GES.L.LV....NIF | |
Retrocopy | SLLLVVGDKLKCEMMDLQDGSLFNRTPKTVAGKE*DLNANSNLVIITTRAH<STRGESGLHLVLCSMNIF |
Parental | KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVI-GSGCNLDSARFRYLMGERLGVHPLSCH |
..II..V.K.SP.CK....SNPVDILTY.AWKI.GFP.N.V..GSGCNLDSA.FRY..GE.L..HP.S.. | |
Retrocopy | IRIILHVSKHSPICK*TSASNPVDILTYEAWKIGGFPRNGVM<GSGCNLDSAWFRYSRGECLEGHPSSYR |
Parental | GWVLGEHGDSSVPVWSGVNVAGVSLKNLHPALG-TDGDKEQ-WKEVHKQVVESAYEVIKLKGYTSWAIGL |
GWVLG.H.D........V.VA.VSLK.LHPALG.TDG......KE.H.QVV.SA.EVIKLKGYT..AIGL | |
Retrocopy | GWVLGDHRDTVGHFGKAVTVAYVSLKTLHPALG<TDGASDK<VKELHTQVVDSASEVIKLKGYTC*AIGL |
Parental | SVADLAESIMKNLRRVHPISTMIKGLY |
S...LAES........H.IST...GL. | |
Retrocopy | SEVELAESNERS-*ALHLISTTVMGLW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |