RetrogeneDB ID: | retro_etel_828 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_170816:859..1500(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 68.33 % |
Parental protein coverage: | 64.76 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | KFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVI-GSGCNLDSARFRYLMGERLGVHPLSCH |
KF.I....K.SP.CK.....NP.D.LT..A.K..GFP.NR.....GCNLD.A.F.YLMGERLG.HP.S.. | |
Retrocopy | KFLILSILKHSPICKWPVGWNPGDTLT*EAGKTGGFPMNRAM<ACGCNLDLAQFHYLMGERLGGHPGSYR |
Parental | GWVLGE-HGDSSVPVWSGVNVAGVSLKNLHPA-LGTDGDKEQWK-EVHKQVVESAYEVIKLKGYTSWAIG |
GWVLGE.HGDSSVP.WSGVN.AG.SLK.LHPA.LGT.G.KE.WK.E.H.QVV.SA.EVIKLKGYT.WAIG | |
Retrocopy | GWVLGE>HGDSSVPGWSGVNIAGISLKYLHPA<LGTGGAKEPWK<ELHTQVVDSASEVIKLKGYTCWAIG |
Parental | LSVADLAESIMK-NLRRVHPISTMIKGLYGINEDVFLSVPCILGQNGISDVVKVTLTTEEEARLKKSADT |
LSV..LAES..K.NLR..H.I.TMIKGL.GI...VFLS.PCI.GQN.ISD.VKV.LT.EEEA.LKKSA.T | |
Retrocopy | LSVGELAESNEK<NLRQLHLIPTMIKGLCGIKDNVFLSAPCI*GQNRISDMVKVSLTPEEEAPLKKSAHT |
Parental | LW-GIQKELQF |
.W.GIQKELQF | |
Retrocopy | RW<GIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |