RetrogeneDB ID: | retro_meug_1260 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold34377:5825..6343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 78.86 % |
Parental protein coverage: | 52.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSDAENWK |
I.SGCNLDSA.F.YLM.ER.G..S.SCHGWVLGEHG.SSVPVWS.VNLAG.SLK.LHP.LGTD.DAENWK | |
Retrocopy | IRSGCNLDSAHFCYLMDERHGIYSSSCHGWVLGEHGNSSVPVWSNVNLAGMSLKTLHP-LGTDADAENWK |
Parental | D-VHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVSYVLGQ |
D..HKQVVES.YEVIKLKGYTS.AI.LSV.DLAESIMKNLRRVHPISTMIK........VF.SV..VLGQ | |
Retrocopy | D<LHKQVVESTYEVIKLKGYTSCAINLSVEDLAESIMKNLRRVHPISTMIKGLYGINEDVFLSVP*VLGQ |
Parental | NGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
NGISDVVKVNLN.EEES.LKKS..T.WGIQK.LQF | |
Retrocopy | NGISDVVKVNLNLEEESCLKKSADTFWGIQKDLQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |