RetrogeneDB ID: | retro_meug_1632 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold495836:363..871(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 88.24 % |
Parental protein coverage: | 50.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MAS.VKD.LILNVLKEDQVPQN..TVVGVGAVGMAC.IS.L.KELAD.LALVDVIEDKLKGEMMDLQHGS | |
Retrocopy | MASAVKDHLILNVLKEDQVPQNNTTVVGVGAVGMACTISILAKELADKLALVDVIEDKLKGEMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPN-CKLLIVSN |
L.LKTPKI.SGKDYSVTANSKLVIV..G..QQEGESRLNLVQRNVN.FKFIIPNIVK.SPN.CKLLIVSN | |
Retrocopy | LCLKTPKIASGKDYSVTANSKLVIVMVGVHQQEGESRLNLVQRNVNVFKFIIPNIVK*SPN>CKLLIVSN |
Parental | PVDILTYVAWKLSGFPKNRVIGSGCNLDSA |
P.DILTYVAWKLSGFPKN.VIGSGCNL.SA | |
Retrocopy | PADILTYVAWKLSGFPKNHVIGSGCNLGSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |