RetrogeneDB ID: | retro_meug_2137 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold93573:1741..2380(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 68.18 % |
Parental protein coverage: | 64.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASTVKDQLILNVLKEDQV-PQNKITVVGVGAVGMA-CAISVLTKELADELALVDVIEDKLKGEMMDLQH |
M.S.VK.QLILNVLK.DQV.P..K......G.V..A.C.I..L.K.LAD...LVDVIEDKL.GEMMDLQH | |
Retrocopy | MTSSVKEQLILNVLKGDQV>PRSKSLLL--GFV*LA*CDIRILKKDLADKFVLVDVIEDKLRGEMMDLQH |
Parental | GSLFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVS |
...F....K.VSG.DYS.TANSKL.I.T....QQEGES.LNL.....NIFKFII..IVKYSP.CKLLIV. | |
Retrocopy | P--FPQNAKVVSGRDYSITANSKLFIQTTMEPQQEGESCLNLLLCSMNIFKFIILSIVKYSPICKLLIVF |
Parental | NPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDS-SVPVWSGVNL |
NPVDILTY.A.KLSGFPK..VI.S.C.LDSA.F..LM.ERLGV.S.SCH.WVLGEHGDS..VPVWSGVN. | |
Retrocopy | NPVDILTYMARKLSGFPKTCVIRS-CHLDSAHFHCLMRERLGVNSSSCHRWVLGEHGDS<HVPVWSGVNV |
Parental | AGVSLKNLHP |
A.VSLKNLHP | |
Retrocopy | ADVSLKNLHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |