RetrogeneDB ID: | retro_meug_1749 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold56429:11706..12273(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 85.49 % |
Parental protein coverage: | 55.99 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 6 |
Parental | MASTVKDQLILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGS |
MASTVKDQLILNVLKEDQV.QNKI.VVGVGAVGMAC.I..LTKELADEL.LVDVIEDK.KG.MMDLQHGS | |
Retrocopy | MASTVKDQLILNVLKEDQVSQNKIIVVGVGAVGMACGITFLTKELADELDLVDVIEDKQKGDMMDLQHGS |
Parental | LFLKTPKIVSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLI-VSN |
LFLKTPK.VSGK.YSVTAN.KLVIVTAGA.QQEGES.LNL.Q.NVNIFKFIIPNIVKYSPNC.LLI.VSN | |
Retrocopy | LFLKTPKFVSGKNYSVTANCKLVIVTAGAHQQEGESHLNLLQHNVNIFKFIIPNIVKYSPNCNLLI>VSN |
Parental | P-VDI-LTYVAWKLSGFPKNRVIGSGC-NLD-SARFRYLMGER-LGVHSLSCH |
P.VDI.LTYVAWK.SGFPKNRVIG.G..NLD.SARF.YLM.ER.LGVHS.SCH | |
Retrocopy | P>VDI>LTYVAWKVSGFPKNRVIGNGW>NLD>SARFHYLMEER>LGVHSSSCH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |