RetrogeneDB ID: | retro_meug_916 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold230563:1005..1516(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 51.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KIVSGK-DYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILT |
KIVS.K.DY.V.AN.KLVIV..G..QQE.ES.LNL...NVNIFKFIIPNIVKYSPN.KLL.VSNPVDILT | |
Retrocopy | KIVSAK<DYGVAAN*KLVIVMVGTCQQEEESHLNLI*HNVNIFKFIIPNIVKYSPNFKLLSVSNPVDILT |
Parental | YVAWKLSGFPKNRVIGSGCNLDSARFRY-LMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKN |
YVAWKL.GFPK..V.G.GCNLD.A.F.Y.LM.ERLGVHS.SC.G.VLGEH.DSSVP.WS.VNL.GVSLKN | |
Retrocopy | YVAWKLNGFPKSHVFGNGCNLDFACFCY<LMEERLGVHSSSCNGLVLGEHADSSVPRWSDVNLTGVSLKN |
Parental | LHPSLGTDSDAENWKDVHKQVVESAYEVIKLKG |
LH.SL.TD.DAENW.DVH.QV.ESAYEVIKLKG | |
Retrocopy | LHLSLETDDDAENWNDVHRQVFESAYEVIKLKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |