RetrogeneDB ID: | retro_meug_68 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_1136:73529..74092(+) | ||
Located in intron of: | ENSMEUG00000015727 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 56.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | YVAWKLSGFP-KNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKN |
Y..WKLSGFP..N.VI.SGCNL..A.F.YLMGERLG.HS.SCH.WVLGEHGDSSV.VWSGVN.A.VSLKN | |
Retrocopy | YMTWKLSGFP<LNHVIASGCNLNFAHFCYLMGERLGAHSSSCHRWVLGEHGDSSVSVWSGVNHASVSLKN |
Parental | LHPSLGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXX |
LHPSL.TD.DAEN.KDVHKQ.VE.AYEVI.LK.Y.SWAIGLSVADLAESIMKNLRRVHPISTMIK..... | |
Retrocopy | LHPSLETDADAENRKDVHKQLVERAYEVIYLKSYISWAIGLSVADLAESIMKNLRRVHPISTMIKGLYSI |
Parental | XXXVFHSVSYVLGQNGISDVVKVNLNTEEESHLKKSTYTLWGIQKELQF |
...VF.SV..VLGQNGISD.VKVNLN.EEES.LKK...TLW.IQKELQF | |
Retrocopy | NEDVFLSVPCVLGQNGISDGVKVNLNLEEESRLKKDVDTLWRIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |