RetrogeneDB ID: | retro_meug_861 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold21014:10094..10856(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 68.08 % |
Parental protein coverage: | 77.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LILNVLKEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI |
..L....E...P.NKIT.VGVG.VGMACAISVL.K.LADEL.LVD..EDKLKGEMMDLQHGSLFL..PKI | |
Retrocopy | IVLVAEEEVAAPNNKITIVGVGQVGMACAISVLAKSLADELVLVDAVEDKLKGEMMDLQHGSLFLQNPKI |
Parental | VSGKDYSVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVA |
V..KD.SVT..SK.V.VT.G..QQEGES.LN..QRNVN.FKFIIP.I.KYSPNC....V.NPVDILTYV. | |
Retrocopy | VADKDCSVTIGSKIVVVTTGVLQQEGESPLN--QRNVNVFKFIIPRIIKYSPNCIMIVVYNPVDILTYVT |
Parental | WKLSGFPKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPS |
WKL...PK..VIGSGCNLDSARF.YLM.E.LG.H..SCHGW.LGEHGDSSV.VW.G.N.A.VSL..L.P. | |
Retrocopy | WKLGDLPKHWVIGSGCNLDSARFCYLMSEKLGIHPSSCHGWILGEHGDSSVVVWNGLNMADVSLQDLNPE |
Parental | LGTDSDAENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNL |
...D.D.E.WK.V......SAY.VIKLKGY..WAIGL.VADL.E...KNL | |
Retrocopy | IRIDNDNEKWKLV----IKSAYKVIKLKGYINWAIGLCVADLIETMLKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |