RetrogeneDB ID: | retro_meug_1945 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold738:49654..50551(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSMEUG00000001462 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 64.21 % |
Parental protein coverage: | 89.52 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KEDQVPQNKITVVGVGAVGMACAISVLTKELADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSGKDY |
.E...P.NKI.VVGVG..GM.CAI..LTK.L.DELALVDV...K.KGEMMDLQHGSLFL.TPKIV..KDY | |
Retrocopy | EEAAIPNNKIIVVGVGQIGMVCAIGILTKSLTDELALVDVLDNKFKGEMMDLQHGSLFLQTPKIVADKDY |
Parental | SVTANSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLIVSNPVDILTYVAWKLSGF |
SVTA.SK.V.VT.G..QQEGESRLNLVQRNVN.FKFIIP.IVKYSP.C....VSN..DILTYV.WKLSG. | |
Retrocopy | SVTAGSKIVVVTVGVHQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNSEDILTYVTWKLSGL |
Parental | PKNRVIGSGCNLDSARFRYLMGERLGVHSLSCHGWVLGEHGDSSVPVWSGVNLAGVSLKNLHPSLGTDSD |
PK...IG.GC.LDSARF.YLM.E.LG.HS..C.G..LGEHGDSSV...SGVN.AGVSL..L.P..GTD.D | |
Retrocopy | PKHQMIGGGCSLDSARFCYLMSEKLGIHSSCCLG*ILGEHGDSSVTM*SGVNVAGVSLQDLNPEMGTDND |
Parental | AENWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKXXXXXXXXVFHSVSY |
.ENWK.VHK.V..SAYEVIK.KGYT..AIGLSVADL.E...KNL.R.HP.ST..K........VF..... | |
Retrocopy | SENWKKVHKLVILSAYEVIKFKGYTNYAIGLSVADLTETMLKNLSRIHPVSTVVKGMYGIENEVFLRLPC |
Parental | VLGQNGISDVVKVNLNTEE |
.L...G........L.... | |
Retrocopy | ILNARGLTSIINQKLKDDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |