RetrogeneDB ID: | retro_ggor_787 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:33418522..33419753(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSGGOG00000010228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKK-ALKLGAKKVFIEDVSREF |
AMSSKGSVVLAYSGGLDTSCIL..LKEQGYDVIAYLANI.QKEDF.E.RKK.ALKLGAKKVF.EDVSREF | |
Retrocopy | AMSSKGSVVLAYSGGLDTSCILL*LKEQGYDVIAYLANISQKEDFKETRKK<ALKLGAKKVFTEDVSREF |
Parental | VEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPH |
VEEFIWPAIQ.SALYEDRYLLGTSL.RPCIARKQVEIA.REGAKYVSHG.TGKG.DQV.FEL.CYSLAP. | |
Retrocopy | VEEFIWPAIQFSALYEDRYLLGTSLTRPCIARKQVEIAHREGAKYVSHGVTGKGSDQVQFELNCYSLAPQ |
Parental | IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPKNQAPPGLYT |
IKVIAPW.MPEFYNRFKGRNDLMEYAK.HGIP..VTPKN.WSM..NLMHISYEAGILENPKNQ.PPGLY. | |
Retrocopy | IKVIAPWSMPEFYNRFKGRNDLMEYAKHHGIPNLVTPKNLWSMNKNLMHISYEAGILENPKNQVPPGLYA |
Parental | KTQDPAKAPNTPDILEIEFKKG-VPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMK |
KTQDPA..PNTPDILEIE.KKG.VPVKV...KDG.T.QTSLELFMYLNEVAGKHGVGR.D.VENRFIGMK | |
Retrocopy | KTQDPA--PNTPDILEIELKKG<VPVKVIDIKDGSTYQTSLELFMYLNEVAGKHGVGRTDVVENRFIGMK |
Parental | SRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEG |
SRGI.E.PAGTILYHAHLDI.AFTMD.EV.KIKQGLGLKFAELVYTGFWHS.ECEF..HC.AKSQE.VEG | |
Retrocopy | SRGI*EAPAGTILYHAHLDIKAFTMDWEVHKIKQGLGLKFAELVYTGFWHSTECEFACHCFAKSQEPVEG |
Parental | KVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHRLQSKVTAK |
KVQVSV.KGQVYIL.RESPLSLYNE.LVSMN..GDYEP.DATGFINI.SLRLKEYH.LQSKVTAK | |
Retrocopy | KVQVSVFKGQVYILSRESPLSLYNEKLVSMNMRGDYEPIDATGFINISSLRLKEYHHLQSKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 50 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .84 RPM |
SRP007412_heart | 0 .03 RPM | 20 .98 RPM |
SRP007412_kidney | 0 .16 RPM | 925 .89 RPM |
SRP007412_liver | 0 .05 RPM | 400 .50 RPM |
SRP007412_testis | 0 .31 RPM | 108 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_985 |
Pan troglodytes | retro_ptro_762 |
Pongo abelii | retro_pabe_834 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies |
retro_ggor_1346, retro_ggor_1675, retro_ggor_2134, retro_ggor_2403, retro_ggor_2574, retro_ggor_2787, retro_ggor_671, retro_ggor_787 ,
|
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |